Autumn Mac and Cheese

Name: Autumn Mac and Cheese
Ingredients: ½ whole Small Butternut Squash, Peeled And Chopped Into Cubes; 1 whole Large Apple, Peeled And Chopped; 2 Tablespoons Olive Oil, Divided; ¼ teaspoons Nutmeg; ½ whole Sweet Onion, Chopped; 2 cups Brussels Sprouts, Chopped; 1 pound Whole Wheat Pasta (I Used Shells); 1 Tablespoon Butter; 1 Tablespoon Flour; 2 cups Milk (I Used 2%, Was What I Had On Hand); 8 ounces, weight Cheese, Grated (I Used Smoked Cheddar); ½ cups Parmesan Cheese, Plus More For Topping; ¼ cups Panko Bread Crumbs